PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_32D78D06A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 105aa    MW: 11810.2 Da    PI: 9.5671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_32D78D06A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3046105159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +C+vkkkv+rsaed +vve tYegeHnh+
  Traes_5DL_32D78D06A.1  46 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCRVKKKVQRSAEDSSVVEATYEGEHNHP 105
                            58***************************99****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.45341105IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-2841105IPR003657WRKY domain
SuperFamilySSF1182902.09E-2542105IPR003657WRKY domain
SMARTSM007747.9E-3146105IPR003657WRKY domain
PfamPF031062.8E-2547105IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
ISNRNVGTGE AEHVDVDSPL SNGTCRRIKV KKVCTRIDPS DTSLVVKDGY QWRKYGQKVT  60
RDNPSPRAYF RCAFAPSCRV KKKVQRSAED SSVVEATYEG EHNHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-19451041674Probable WRKY transcription factor 4
2lex_A2e-19451041674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4243111e-152JX424311.1 Triticum monococcum WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578125.17e-55PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH74e-40WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLN1QZ981e-72N1QZ98_AEGTA; Putative WRKY transcription factor 40
TrEMBLW5FRY18e-74W5FRY1_WHEAT; Uncharacterized protein
STRINGMLOC_4945.15e-63(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-41WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]